STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED70642.1Transposase, IS630 family. (158 aa)    
Predicted Functional Partners:
CED70643.1
Transposase, IS630 family.
     0.949
CED56794.1
Transposase, IS630 family.
    0.791
CED72565.1
Transposase, IS630 family.
    0.787
CED56918.1
Putative HTH-type transcriptional regulator.
 
     0.741
CED57924.1
Putative uncharacterized protein.
  
     0.701
CED70260.1
Putative exported protein.
  
     0.697
CED57904.1
Putative exported MORN variant repeat protein.
  
     0.632
CED71213.1
Putative methyltransferase.
  
     0.539
CED71584.1
Putative peptidase.
  
     0.526
CED57292.1
Putative nucleotide-binding protein.
  
     0.519
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.