STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED70672.1Putative uncharacterized protein, GGDEF domain family. (520 aa)    
Predicted Functional Partners:
CED57742.1
Membrane associated signaling protein.
 
 
 0.811
CED72408.1
Signaling protein.
 
 
 0.804
CED70191.1
Putative signal transduction protein, GGDEF family.
 
 
 0.800
CED57608.1
Putative membrane associated signaling protein.
  
    0.796
CED57729.1
Signalling protein.
 
 
 0.796
CED57793.1
Membrane associated signaling protein.
  
    0.795
CED71473.1
Response regulator receiver.
  
   0.794
CED57816.1
Putative signaling protein.
  
 
 0.793
CED57063.1
Two component transcriptional regulator.
 
   0.792
mshH
Putative membrane associated signaling protein, MshH.
  
  
 0.788
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.