STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70680.1Putative uncharacterized protein. (345 aa)    
Predicted Functional Partners:
CED70679.1
Membrane protein.
       0.839
CED70681.1
Putative uncharacterized protein.
       0.677
truC
tRNA pseudouridine synthase C.
       0.677
CED71682.1
Putative uncharacterized protein.
  
     0.667
CED70873.1
Membrane protein.
  
     0.635
CED72068.1
Putative exported protein.
  
     0.600
CED70934.1
Putative uncharacterized protein.
  
     0.580
CED70990.1
Putative lipoprotein.
  
     0.489
grxA
Glutaredoxin 1.
  
     0.485
CED70178.1
Putative exported protein.
  
     0.482
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.