STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhaOInner membrane transport protein. (434 aa)    
Predicted Functional Partners:
CED57790.1
Inner membrane protein.
  
     0.669
CED70712.1
Putative uncharacterized protein; Belongs to the UPF0597 family.
 
  
 0.629
CED71585.1
Putative uncharacterized protein; Belongs to the UPF0267 family.
  
     0.538
CED57739.1
Polysulphide reductase, NrfD.
  
     0.527
CED72074.1
Putative exported protein.
  
   
 0.512
CED72591.1
Putative uncharacterized protein.
  
     0.512
apaH
Bis(5'nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
   0.507
CED70711.1
Putative DNA-binding protein.
 
     0.493
wavC
Lipopolysaccharide core biosynthesis kinase protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.485
dcuC
Anaerobic C4-dicarboxylate transporter DcuC.
  
   
 0.480
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.