STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompKOuter membrane protein OmpK. (265 aa)    
Predicted Functional Partners:
panE
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.661
thiJ
Protein ThiJ.
       0.659
CED70427.1
Putative maltoporin.
  
   
 0.580
exbD1
TonB system transport protein ExbD1.
  
     0.540
CED56828.1
Peptidase, family M3.
  
     0.539
CED71144.1
Putative branched-chain amino acid transport protein, AzlD family.
  
     0.522
CED72432.1
Putative uncharacterized protein.
  
   
 0.517
CED71313.1
Putative uncharacterized protein.
  
     0.503
ompU
Major outer membrane protein OmpU.
  
  
 0.499
CED56988.1
Putative exported protein.
  
     0.498
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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