STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copACopper-transporting P-type ATPase. (911 aa)    
Predicted Functional Partners:
zntA
Lead, cadmium, zinc and mercury-transporting ATPase.
 
 
0.860
CED71442.1
Putative cation-transporting ATPase.
 
 
0.854
CED70844.1
Putative exported protein.
 
   
 0.807
CED71636.1
Sensor protein, GGDEF family.
  
  
 0.766
CED57392.1
Putative exported protein.
     
 0.760
cueR
HTH-type transcriptional regulator CueR (copper export regulator).
  
  
 0.757
CED57394.1
Putative cation efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.683
fieF
Ferrous-iron efflux pump FieF; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.672
CED70395.1
Hybrid peroxiredoxin (thioredoxin reductase).
   
 
 0.666
CED71657.1
Glutaredoxin-3 (grx3).
   
 
 0.666
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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