STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nagCN-acetylglucosamine repressor. (404 aa)    
Predicted Functional Partners:
nagE-2
PTS permease for N-acetylglucosamine and glucose.
  
 
 0.961
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.950
CED57707.1
PTS system, sucrose-specific EIIBC component.
  
 
 0.943
treB
PTS system, trehalose-specific EIIBC component.
  
 
 0.887
nagE
PTS system permease for N-acetylglucosamine and glucose.
  
 
 0.887
ptsG
PTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component].
  
 
 0.887
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
   
 0.764
CED70865.1
Sodium/hydrogen antiporter; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.684
asnB
Asparagine synthetase B.
       0.516
neuC
UDP-N-acetylglucosamine 2-epimerase.
 
    
 0.449
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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