STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70891.1Transcriptional regulator, AraC family. (1134 aa)    
Predicted Functional Partners:
CED71636.1
Sensor protein, GGDEF family.
  
 
 0.703
arcB
Sensor protein.
  
 
 0.686
CED57217.1
HTH-type transcriptional regulator, AraC family.
  
     0.629
CED57022.1
Putative HTH-type regulatory protein, AraC family.
  
     0.621
CED57220.1
Sensor protein.
  
 
   0.612
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.587
luxU
Phosphorelay protein LuxU.
   
 
 0.575
CED72072.1
Putative porin.
  
 
   0.566
znuA
High-affinity zinc uptake system protein ZnuA precursor.
       0.559
CED71817.1
Putative uncharacterized protein.
  
     0.555
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.