STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70950.1MFS drug resistance transporter; Belongs to the major facilitator superfamily. (534 aa)    
Predicted Functional Partners:
CED70949.1
Secretion protein, HlyD family.
 
 
 0.996
CED57602.1
Putative secretion protein, HlyD family.
 
 
 0.780
CED57458.1
Secretion protein, HlyD family.
 
 
 0.760
CED57577.1
Membrane protein.
 
 
 0.711
CED57040.1
Secretion protein, HlyD family.
 
 
 0.600
rsuA
Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.577
tolC
Outer membrane protein TolC precursor.
  
 
 0.576
CED71236.1
Outer membrane efflux protein.
  
 
 0.576
CED72437.1
Putative membrane protein.
  
 
 0.571
CED70948.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.519
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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