STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70956.1ABC transporter, ATP-binding protein. (223 aa)    
Predicted Functional Partners:
CED70957.1
Predicted permease.
 
 
 0.960
CED70958.1
Membrane protein.
 
   
 0.880
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.813
CED71187.1
Putative ABC transporter permease.
 
 
 0.739
CED71237.1
ABC transporter, permease protein.
 
 0.725
CED57606.1
ABC transporter ATP-binding protein.
 
   
 0.705
lolE
Lipoprotein-releasing system transmembrane protein.
  
 
 0.693
CED57445.1
ABC transporter, permease component.
  
 
 0.693
CED71186.1
Putative ABC transporter permease.
  
 
 0.693
CED71238.1
ABC transporter, permease protein.
 
 
 0.677
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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