STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70956.1ABC transporter, ATP-binding protein. (223 aa)    
Predicted Functional Partners:
CED70957.1
Predicted permease.
 
 
 0.952
CED70958.1
Membrane protein.
 
   
 0.863
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.757
CED71237.1
ABC transporter, permease protein.
 
 0.755
CED71187.1
Putative ABC transporter permease.
 
 
 0.726
CED71238.1
ABC transporter, permease protein.
 
 0.713
CED57606.1
ABC transporter ATP-binding protein.
 
   
 0.708
lolE
Lipoprotein-releasing system transmembrane protein.
  
 
 0.678
CED57445.1
ABC transporter, permease component.
  
 
 0.678
CED71186.1
Putative ABC transporter permease.
  
 
 0.678
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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