STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70961.1Membrane protein; No significant database matches. (396 aa)    
Predicted Functional Partners:
CED70962.1
Membrane protein.
 
    0.945
CED70150.1
Putative exported protein.
 
    0.784
CED57050.1
Membrane protein.
 
    0.783
CED72225.1
Membrane protein.
 
    0.783
CED70960.1
Methyl-accepting chemotaxis protein.
       0.676
CED70999.1
Putative response regulator.
  
     0.553
CED56721.1
Putative uncharacterized protein.
  
     0.538
CED57260.1
Putative uncharacterized protein.
  
 
   0.536
vacJ
Lipoprotein VacJ precursor.
    
 
 0.535
vtsD
Putative type VI secretion protein, periplasmic solute-binding protein VtsD.
 
     0.532
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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