STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hexRHTH-type transcriptional regulator HexR. (284 aa)    
Predicted Functional Partners:
CED57707.1
PTS system, sucrose-specific EIIBC component.
  
  
 0.814
CED71636.1
Sensor protein, GGDEF family.
  
  
 0.642
CED70967.1
Pyridoxal-dependent decarboxylase.
       0.573
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
  
 0.571
grxA
Glutaredoxin 1.
       0.553
eda
KHG/KDPG aldolase.
 
   
 0.535
nagE-2
PTS permease for N-acetylglucosamine and glucose.
 
  
 0.529
CED57769.1
Gluconate permease.
 
   
 0.482
treB
PTS system, trehalose-specific EIIBC component.
  
  
 0.469
nagE
PTS system permease for N-acetylglucosamine and glucose.
  
  
 0.469
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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