STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase. (321 aa)    
Predicted Functional Partners:
CED72158.1
Putative peroxidase/antioxidant.
  
 
 0.954
trxA
Thioredoxin 1; Belongs to the thioredoxin family.
 
 
 0.940
trxC
Thioredoxin 2.
 
 
 0.859
CED70847.1
Thioredoxin.
  
 
 0.837
CED56922.1
Putative ferredoxin.
   
 
 0.793
CED56980.1
Putative suppressor for copper-sensitivity D.
  
 
 0.768
catA
Catalase; Belongs to the catalase family.
   
 
 0.763
CED57598.1
Putative ferredoxin oxidoreductase.
   
 
 0.758
CED71710.1
Thiol/disulfide interchange protein.
   
 
 0.692
dsbE
Thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG).
   
 
 0.692
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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