STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaDPutative aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family. (291 aa)    
Predicted Functional Partners:
pgm
Phosphoglucomutase.
  
  
 0.922
crr
Glucose-specific phosphotransferase enzyme IIA component (PTS system).
  
  
  0.912
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.910
CED70127.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
ptsG
PTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component].
     
  0.900
CED57769.1
Gluconate permease.
    
 0.822
eda
KHG/KDPG aldolase.
    
 0.822
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 
  0.813
CED57380.1
Putative exported protein.
    
   0.811
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.
     
 0.806
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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