STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgTMembrane protein, Cyd operon protein. (35 aa)    
Predicted Functional Partners:
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
 0.982
cydA
Cytochrome d ubiquinol oxidase subunit I.
 
 0.978
CED56702.1
Cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.827
CED56701.1
Cytochrome d ubiquinol oxidase.
 
 
 0.788
CED57260.1
Putative uncharacterized protein.
  
     0.584
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
  
  0.559
mshQ
MSHA biogenesis protein MshQ.
  
     0.535
nrfG
Putative formate-dependent nitrite reductase complex NrfG subunit.
  
     0.504
frdB
Fumarate reductase complex, iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.499
CED70361.1
Fumarate reductase complex, flavoprotein subunit.
     
  0.499
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.