STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71071.1Serine/threonine protein kinase. (323 aa)    
Predicted Functional Partners:
vasL-2
Serine/threonine phosphoprotein phosphatase.
 
 
 0.985
vasC-2
Putative type VI secretion protein VasC.
 
  
 0.899
vasK-2
Putative type VI secretion protein VasK.
 
  
 0.844
vasE-2
Putative type VI secretion protein VasE.
 
  
 0.837
vasF-2
Putative type VI secretion protein VasF.
 
  
 0.831
vasD-2
Putative type VI secretion protein VasD.
 
  
 0.810
vasC
Type VI secretion-related FHA domain protein VasC.
  
  
 0.667
CED56767.1
Type VI secretion-related uncharacterized protein.
  
  
 0.655
vgrG
Putative type VI secretion protein VgrG.
 
  
 0.646
vgrG-2
VgrG protein, VgrG.
 
  
 0.640
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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