STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ompHPorin-like protein H. (313 aa)    
Predicted Functional Partners:
vacJ
Lipoprotein VacJ precursor.
   
 
 0.786
CED71091.1
Putative exported protein; Belongs to the UPF0319 family.
       0.686
CED56788.1
RHS protein.
   
  
 0.643
CED72570.1
Putative outer membrane associated TonB dependent receptor.
    
 
 0.565
hcp-3
Hemolysin-coregulated protein Hcp-3.
      
 0.548
amiB
N-acetylmuramoyl-L-alanine amidase.
      
 0.548
ompA
Outer membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.542
CED57675.1
Membrane protein; No significant database matches.
      
 0.531
CED70469.1
Exported serine protease.
    
 
 0.531
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.
      
 0.531
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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