STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71144.1Putative branched-chain amino acid transport protein, AzlD family. (106 aa)    
Predicted Functional Partners:
CED71143.1
Putative branched-chain amino acid transport protein, AzlC family.
 
  
 0.979
CED71142.1
Transcriptional regulator, AraC-family.
 
     0.782
exbD1
TonB system transport protein ExbD1.
  
     0.533
ompK
Outer membrane protein OmpK.
  
     0.522
CED71682.1
Putative uncharacterized protein.
  
     0.476
CED71141.1
Putative lysine exporter protein.
 
     0.475
CED72432.1
Putative uncharacterized protein.
  
     0.452
CED71694.1
Putative uncharacterized protein.
  
     0.407
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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