Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71209.1Putative lipoprotein. (465 aa)    
Predicted Functional Partners:
CED71211.1
Putative lipoprotein.
 
   
 0.937
CED71210.1
Putative lipoprotein.
     
 0.846
CED57620.1
Putative lipoprotein.
 
   
 0.781
CED57621.1
Putative lipoprotein.
  
     0.731
CED71208.1
HIT family protein.
       0.701
CED71218.1
Putative uncharacterized protein; Belongs to the UPF0227 family.
 
     0.481
CED70676.1
Putative uncharacterized protein.
  
     0.467
CED57397.1
Membrane protein.
  
     0.456
CED71452.1
Putative lipoprotein.
  
     0.418
CED71212.1
Putative uncharacterized protein.
       0.417
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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