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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71223.1Transcriptional regulator, two-component response regulator. (238 aa)    
Predicted Functional Partners:
CED71224.1
Membrane receptor, histidine kinase; Probably regulates genes involved in cell wall metabolism and genes involved in virulence.
 
 
 0.981
CED57442.1
Two component transcriptional regulator.
 
  
 0.889
CED71222.1
Carbon starvation protein.
 
   
 0.612
CED71225.1
Membrane protein, GPR1/FUN34/yaaH family.
 
     0.540
CED71636.1
Sensor protein, GGDEF family.
     
 0.485
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.479
varS
Response regulator, histidine kinase VarS.
     
 0.412
luxU
Phosphorelay protein LuxU.
     
 0.410
arcB
Sensor protein.
     
 0.408
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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