STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71235.1Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (378 aa)    
Predicted Functional Partners:
CED71237.1
ABC transporter, permease protein.
 
 
 0.975
CED71238.1
ABC transporter, permease protein.
 
 
 0.975
CED71236.1
Outer membrane efflux protein.
 
 
 0.959
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.919
CED71239.1
ABC transporter, ATP-binding protein.
 
 
 0.888
CED71748.1
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.701
CED57427.1
Outer membrane protein, OmpA family.
  
 
   0.693
CED72644.1
Putative integral membrane component of multidrug efflux system; Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.681
CED56989.1
TonB-dependent heme receptor.
  
   
 0.680
CED57905.1
Integral membrane protein, multidrug efflux pump.
 
   0.662
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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