Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CED71236.1Outer membrane efflux protein. (427 aa)    
Predicted Functional Partners:
CED71235.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.983
CED71749.1
Putative secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.969
CED72643.1
Putative multidrug transporter, HlyD family; Similar to Pseudomonas aeruginosa Multidrug transporter, membrane fusion protein MexA (PDB 1VF7), evalue=3e-21, identity=(80, 326); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.965
CED57906.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.960
CED57905.1
Integral membrane protein, multidrug efflux pump.
 
 0.944
CED71748.1
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.943
CED72644.1
Putative integral membrane component of multidrug efflux system; Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.943
CED71238.1
ABC transporter, permease protein.
 
 
 0.942
CED71237.1
ABC transporter, permease protein.
 
 
 0.928
tolC
Outer membrane protein TolC precursor.
  
  
 
0.916
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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