STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71237.1ABC transporter, permease protein. (405 aa)    
Predicted Functional Partners:
CED71239.1
ABC transporter, ATP-binding protein.
 
 0.983
CED71235.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.967
CED71236.1
Outer membrane efflux protein.
 
 
 0.928
CED71238.1
ABC transporter, permease protein.
 
    
0.884
CED57762.1
Membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.849
CED57446.1
ABC transporter, ATP-binding component.
 
 0.845
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
 0.797
CED71188.1
ABC transporter ATP-binding protein.
 
 0.780
CED70956.1
ABC transporter, ATP-binding protein.
 
 0.725
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.706
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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