STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71239.1ABC transporter, ATP-binding protein. (223 aa)    
Predicted Functional Partners:
CED71237.1
ABC transporter, permease protein.
 
 0.983
CED71238.1
ABC transporter, permease protein.
 
 
 0.972
CED71235.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.859
CED71236.1
Outer membrane efflux protein.
   
 
 0.829
CED71187.1
Putative ABC transporter permease.
 
 
 0.718
CED57445.1
ABC transporter, permease component.
 
 
 0.674
CED57762.1
Membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.660
lolE
Lipoprotein-releasing system transmembrane protein.
  
 
 0.626
CED70957.1
Predicted permease.
  
 
 0.626
CED71186.1
Putative ABC transporter permease.
  
 
 0.626
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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