STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71263.1Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1072 aa)    
Predicted Functional Partners:
CED71259.1
Type I restriction-modification system, N-6 adenine-specific DNA methylase.
 
 
 0.991
CED71260.1
Type I restriction-modification system, DNA specificity domain.
 
  
 0.978
hsdM
Type I restriction enzyme EcoEI M protein.
 
 
 0.966
CED71264.1
Putative uncharacterized protein.
 
   
 0.953
hsdS
Type-1 restriction enzyme EcoEI specificity protein.
 
  
 0.860
CED57062.1
Putative uncharacterized protein.
  
    0.801
CED71261.1
ATP binding protein.
       0.735
CED71262.1
Putative uncharacterized protein.
       0.719
CED71564.1
Putative uncharacterized protein.
  
    0.670
CED72180.1
Putative type III restriction enzyme, res subunit.
 
  
 0.655
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.