STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71267.1Putative iron-regulated protein. (417 aa)    
Predicted Functional Partners:
CED71268.1
Putative exported protein.
 
    0.962
CED71269.1
Putative lipoprotein.
 
    0.949
CED71270.1
Putative lipoprotein.
 
    0.893
fbpA
iron(III) ABC transporter, periplasmic iron-compound-binding protein.
  
    0.838
CED57693.1
Putative membrane protein.
   
    0.610
CED57694.1
Putative exported protein.
   
    0.589
ribA
GTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.524
CED71271.1
Metallo-beta-lactamase.
       0.428
CED57868.1
ABC transporter, extracellular solute-binding protein.
   
    0.414
CED72422.1
Putative lipoprotein.
  
     0.411
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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