Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71268.1Putative exported protein. (466 aa)    
Predicted Functional Partners:
CED71270.1
Putative lipoprotein.
 
  
 0.991
CED71269.1
Putative lipoprotein.
 
  
 0.986
CED71267.1
Putative iron-regulated protein.
 
    0.971
CED71271.1
Metallo-beta-lactamase.
       0.698
fbpA
iron(III) ABC transporter, periplasmic iron-compound-binding protein.
 
    0.619
CED57694.1
Putative exported protein.
   
    0.558
CED57085.1
Putative lipoprotein.
      
 0.548
CED57145.1
Putative exported protein.
      
 0.548
CED57293.1
Putative exported protein; No significant database matches.
      
 0.548
CED57431.1
Putative lipoprotein.
      
 0.548
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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