STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71336.1Chitinase. (569 aa)    
Predicted Functional Partners:
gbpA
GlcNAc-binding protein A; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
 
  
 0.821
CED70545.1
Putative endochitinase.
  
     0.771
chiA
Chitinase.
 
 
 
0.711
CED71069.1
Chitodextrinase.
 
 
 
0.684
CED70550.1
(GlcNAc)2 ABC transporter, substrate-binding protein.
  
   
 0.655
CED70673.1
Membrane protein.
  
     0.653
CED56663.1
Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.
  
     0.618
luxO
Two-component response regulator, transcriptional regulatory protein LuxO.
      
 0.618
rpoD
RNA polymerase sigma factor RpoD (sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.618
litR
HTH-type luminescence regulator LitR.
      
 0.618
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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