STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71343.1Putative acetyltransferase, GNAT family. (154 aa)    
Predicted Functional Partners:
CED57378.1
Putative acetyltransferase, GNAT family.
  
     0.727
CED56721.1
Putative uncharacterized protein.
  
     0.726
CED57316.1
Putative acetyltransferase.
  
     0.697
vtsC
Putative type VI secretion protein, periplasmic solute-binding protein VtsC.
  
     0.690
CED57625.1
Putative lipoprotein.
  
     0.670
CED57320.1
Putative uncharacterized protein.
  
     0.587
CED56906.1
Secreted peptidase, family C25.
  
     0.582
CED71374.1
Putative uncharacterized protein.
   
 
 0.522
CED71395.1
Putative TonB-dependent receptor.
   
 
 0.522
CED56988.1
Putative exported protein.
  
     0.509
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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