STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71389.1Putative uncharacterized protein. (1567 aa)    
Predicted Functional Partners:
CED57100.1
Putative uncharacterized phage protein.
  
  
 0.869
CED70943.1
Putative uncharacterized protein.
  
    0.761
hsdM
Type I restriction enzyme EcoEI M protein.
 
  
 0.635
CED71259.1
Type I restriction-modification system, N-6 adenine-specific DNA methylase.
 
  
 0.629
hsdR
Type I restriction enzyme EcoAI R protein.
 
    0.617
gltB
Glutamate synthase, large subunit.
  
    0.594
CED71387.1
Putative acetyltransferase, (GNAT) domain.
 
     0.486
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.483
CED71388.1
Putative uncharacterized protein.
       0.480
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
       0.477
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.