STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71413.1Putative SAM-dependent methyltransferase. (218 aa)    
Predicted Functional Partners:
CED71546.1
Phage baseplate J-like protein.
  
     0.684
CED71534.1
Phage late control gene D protein.
  
    0.660
CED71548.1
Phage baseplate assembly protein V.
  
     0.619
CED71540.1
Phage tail sheath protein FI-like.
  
     0.598
CED71412.1
Putative multidrug resistance protein, MatE family; Similar to Pseudomonas aeruginosa Multidrug resistance protein PmpM UniProt:Q9I3Y3 (477 aa) fasta scores: E()=1.3e-20, 27.887% id in 459 aa.
       0.561
CED71414.1
Putative uncharacterized protein.
       0.468
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.448
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.448
chiA
Chitinase.
  
   
 0.422
CED71411.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
       0.402
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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