Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fnrFumarate and nitrate reduction regulatory protein. (250 aa)    
Predicted Functional Partners:
uspE
Universal stress protein E.
 
  
 0.812
CED71440.1
Membrane protein.
 
    0.743
CED71442.1
Putative cation-transporting ATPase.
     
 0.683
ccoS
Cytochrome oxidase maturation protein CcoS.
  
  
 0.677
CED71277.1
GGDEF family protein.
 
 
 
 0.675
CED56834.1
Putative regulator, GGDEF family protein.
 
 
 
 0.674
CED71505.1
Putative response regulator.
 
 
 
 0.673
CED56814.1
Putative regulator, GGDEF family protein.
 
 
 
 0.672
rpoB
DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.658
CED71443.1
Putative lipoprotein.
       0.650
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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