STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
huvZHeme uptake and utilization protein HuvZ. (175 aa)    
Predicted Functional Partners:
huvX
Heme uptake and utilization protein HuvX.
 
  
 0.952
phuW
Putative coproporphyrinogen oxidase PhuW.
 
   
 0.751
CED57776.1
Putative iron ABC transporter, plasmic binding protein.
  
    0.716
exbD1
TonB system transport protein ExbD1.
 
  
 0.699
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
 
  
 0.683
fbpA
iron(III) ABC transporter, periplasmic iron-compound-binding protein.
   
    0.679
huvC
Heme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.639
CED56989.1
TonB-dependent heme receptor.
 
  
 0.613
tonB1
TonB protein.
 
  
 0.606
hutD
Heme transporter protein HuvD, ATP-binding component.
 
   
 0.599
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.