Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phuWPutative coproporphyrinogen oxidase PhuW. (452 aa)    
Predicted Functional Partners:
huvX
Heme uptake and utilization protein HuvX.
   
 0.980
tonB1
TonB protein.
 
   
 0.910
huvZ
Heme uptake and utilization protein HuvZ.
 
   
 0.891
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
     
 0.857
huvC
Heme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.857
CED57219.1
Putative uncharacterized protein.
     
 0.736
exbD1
TonB system transport protein ExbD1.
 
     0.707
hutD
Heme transporter protein HuvD, ATP-binding component.
     
 0.633
tonB2
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
     
 0.627
tonB2-2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
     
 0.627
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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