STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB1TonB system transport protein ExbB1. (229 aa)    
Predicted Functional Partners:
exbD1
TonB system transport protein ExbD1.
 
 
 0.956
tonB1
TonB protein.
 
 
 0.932
exbD2
TonB system transport protein ExbD2.
 
 
 0.899
exbD2-2
TonB system transport protein ExbD2.
 
 
 0.893
CED56694.1
TonB system biopolymer transport protein ExbD/TolR.
 
 
 0.867
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
  
  
 0.815
tolR
TolR protein, membrane component; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.812
huvC
Heme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.806
hutD
Heme transporter protein HuvD, ATP-binding component.
     
 0.762
tonB2
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.702
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.