STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
huvCHeme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (345 aa)    
Predicted Functional Partners:
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
 
 
 0.992
hutD
Heme transporter protein HuvD, ATP-binding component.
 
 
 0.991
pvuE
Ferric vibrioferrin transport ATP-binding protein PvuE.
 
 
 0.950
CED57774.1
Putative iron ABC transporter, ATP-binding protein.
 
 
 0.940
tonB1
TonB protein.
 
   
 0.927
phuW
Putative coproporphyrinogen oxidase PhuW.
     
 0.857
huvX
Heme uptake and utilization protein HuvX.
     
 0.854
exbD1
TonB system transport protein ExbD1.
  
  
 0.843
CED57776.1
Putative iron ABC transporter, plasmic binding protein.
 
 
 0.826
exbB1
TonB system transport protein ExbB1.
 
  
 0.809
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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