STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71546.1Phage baseplate J-like protein. (326 aa)    
Predicted Functional Partners:
CED71540.1
Phage tail sheath protein FI-like.
 
 
 0.998
CED71548.1
Phage baseplate assembly protein V.
 
  
 0.997
CED71545.1
Phage tail protein I.
  
 
 0.996
CED71534.1
Phage late control gene D protein.
 
  
 0.992
CED71536.1
Phage U-like protein.
  
 
 0.989
CED71547.1
Putative uncharacterized phage protein.
  
 
 0.987
CED71539.1
Putative phage tail tube protein.
  
 
 0.973
CED71544.1
Phage tail fiber protein gpH.
  
  
 0.968
CED71556.1
Phage terminase large subunit.
 
  
 0.921
CED71537.1
Phage-related tail protein.
 
  
 0.896
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.