STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71546.1Phage baseplate J-like protein. (326 aa)    
Predicted Functional Partners:
CED71540.1
Phage tail sheath protein FI-like.
 
   0.993
CED71548.1
Phage baseplate assembly protein V.
 
  
 0.992
CED71545.1
Phage tail protein I.
  
 
 0.989
CED71547.1
Putative uncharacterized phage protein.
  
 
 0.987
CED71534.1
Phage late control gene D protein.
 
  
 0.977
CED71539.1
Putative phage tail tube protein.
  
 
 0.975
CED71536.1
Phage U-like protein.
  
 
 0.968
CED71544.1
Phage tail fiber protein gpH.
  
  
 0.964
CED71556.1
Phage terminase large subunit.
 
  
 0.926
CED71537.1
Phage-related tail protein.
 
  
 0.890
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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