Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71593.1Putative lipoprotein. (840 aa)    
Predicted Functional Partners:
CED57455.1
Putative lipoprotein.
  
     0.757
CED71866.1
Integral membrane protein.
 
    0.751
CED71801.1
Putative exported protein.
  
     0.725
CED57696.1
Putative exported protein.
  
  
 0.705
epsL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.657
exeN
General secretion pathway protein N.
  
     0.647
CED71594.1
Outer membrane protein transport protein.
       0.645
epsC
General secretion pathway protein C.
  
     0.587
mshD-3
Type IV pilus, MSHA pilin protein MshD.
  
     0.562
mshP-2
MSHA biogenesis protein MshP.
  
     0.538
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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