STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71600.1HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (281 aa)    
Predicted Functional Partners:
CED70673.1
Membrane protein.
  
     0.568
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.557
CED56801.1
HTH-type transcriptional regulator, TetR family.
  
 
   0.539
CED70595.1
Peripheral membrane protein.
  
     0.527
CED71706.1
Putative membrane-associated phospholipid phosphatase.
  
     0.518
CED57022.1
Putative HTH-type regulatory protein, AraC family.
  
    0.463
CED71149.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.453
pvsD
Vibrioferrin biosynthesis protein PvsD.
  
     0.452
pvsB
Vibrioferrin biosynthesis protein PvsB.
  
     0.441
CED56987.1
Putative lipoprotein.
  
     0.437
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.