STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED71613.1Putative lipoprotein. (427 aa)    
Predicted Functional Partners:
lolE
Lipoprotein-releasing system transmembrane protein.
  
 
 0.616
CED57445.1
ABC transporter, permease component.
  
 
 0.616
CED70957.1
Predicted permease.
  
 
 0.616
CED71186.1
Putative ABC transporter permease.
  
 
 0.616
CED71187.1
Putative ABC transporter permease.
  
 
 0.616
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.603
CED71237.1
ABC transporter, permease protein.
  
 
 0.603
CED71238.1
ABC transporter, permease protein.
  
 
 0.603
CED71610.1
ABC 3 transport family protein.
  
  
 0.560
CED71611.1
Periplasmic solute binding protein.
  
    0.554
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.