STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71617.1Transposase, IS1595 family. (314 aa)    
Predicted Functional Partners:
CED57625.1
Putative lipoprotein.
  
     0.636
CED71636.1
Sensor protein, GGDEF family.
  
 
 0.572
CED71616.1
Putative uncharacterized protein; No significant database matches.
       0.540
CED56721.1
Putative uncharacterized protein.
  
     0.517
arcB
Sensor protein.
  
 
 0.500
flgD
Flagellar basal-body rod protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.494
CED71343.1
Putative acetyltransferase, GNAT family.
  
     0.487
vtsC
Putative type VI secretion protein, periplasmic solute-binding protein VtsC.
 
     0.485
luxU
Phosphorelay protein LuxU.
  
 
 0.482
hcp-3
Hemolysin-coregulated protein Hcp-3.
  
     0.464
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.