STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvuBFerric vibrioferrin-binding periplasmic protein PvuB. (307 aa)    
Predicted Functional Partners:
pvuE
Ferric vibrioferrin transport ATP-binding protein PvuE.
 
 
 0.994
pvuD
Ferric vibrioferrin transport system permease protein PvuD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.992
pvuC
Ferric vibrioferrin transport system permease protein PvuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.990
pvuA
Iron-regulated outer membrane protein PvuA.
  
  
 0.948
CED57547.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.872
CED57546.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.852
CED57545.1
Ferric siderophore transport protein, ATP-binding component.
  
  
 0.818
pvsA
Vibrioferrin biosynthesis protein PvsA.
 
   
 0.722
psuA
Iron-regulated outer membrane protein PsuA.
 
     0.652
CED57548.1
Ferric siderophore transport protein, siderophore-binding protein.
  
  
0.651
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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