STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71656.1Putative uncharacterized protein. (560 aa)    
Predicted Functional Partners:
CED72430.1
Putative chemotactic response regulator, CheC.
  
     0.661
CED56718.1
Methyl-accepting chemotaxis protein, CheC-like family.
  
     0.611
CED71657.1
Glutaredoxin-3 (grx3).
       0.581
CED57171.1
Putative uncharacterized protein.
 
    0.557
CED71658.1
Putative exported protein.
       0.552
CED57572.1
Methyl-accepting chemotaxis protein, CheC-like family.
  
     0.535
CED71652.1
Putative membrane protein.
  
     0.520
CED70597.1
PilZ domain containing protein.
  
     0.475
motB
Sodium-driven polar flagellar protein MotB.
 
    0.460
waaF
Putative LPS heptosyltransferase II.
  
    0.454
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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