aapJ protein (Aliivibrio wodanis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aapJ

General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family. (342 aa)

Predicted Functional Partners:

aapM

0.987

aapQ

0.986

aapP

0.980

CED57059.1

0.735

yccA

0.506

CED71696.1

0.430

CED57056.1

0.423

tusE

0.400

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED57056.1	CED57059.1	AWOD_II_0411	AWOD_II_0414	Amino acid ABC transporter, inner membrane component.	Amino acid ABC transporter, ATP-binding protein.	0.985
CED57056.1	aapJ	AWOD_II_0411	AWOD_I_1626	Amino acid ABC transporter, inner membrane component.	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.423
CED57056.1	aapM	AWOD_II_0411	AWOD_I_1628	Amino acid ABC transporter, inner membrane component.	General L-amino acid ABC transporter permease protein.	0.651
CED57056.1	aapP	AWOD_II_0411	AWOD_I_1629	Amino acid ABC transporter, inner membrane component.	General L-amino acid transport ATP-binding subunit.	0.944
CED57056.1	aapQ	AWOD_II_0411	AWOD_I_1627	Amino acid ABC transporter, inner membrane component.	General L-amino acid ABC transporter permease protein.	0.684
CED57059.1	CED57056.1	AWOD_II_0414	AWOD_II_0411	Amino acid ABC transporter, ATP-binding protein.	Amino acid ABC transporter, inner membrane component.	0.985
CED57059.1	aapJ	AWOD_II_0414	AWOD_I_1626	Amino acid ABC transporter, ATP-binding protein.	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.735
CED57059.1	aapM	AWOD_II_0414	AWOD_I_1628	Amino acid ABC transporter, ATP-binding protein.	General L-amino acid ABC transporter permease protein.	0.945
CED57059.1	aapQ	AWOD_II_0414	AWOD_I_1627	Amino acid ABC transporter, ATP-binding protein.	General L-amino acid ABC transporter permease protein.	0.821
CED71696.1	aapJ	AWOD_I_1625	AWOD_I_1626	Siroheme synthase, virulence protein VirC.	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.430
aapJ	CED57056.1	AWOD_I_1626	AWOD_II_0411	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, inner membrane component.	0.423
aapJ	CED57059.1	AWOD_I_1626	AWOD_II_0414	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, ATP-binding protein.	0.735
aapJ	CED71696.1	AWOD_I_1626	AWOD_I_1625	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Siroheme synthase, virulence protein VirC.	0.430
aapJ	aapM	AWOD_I_1626	AWOD_I_1628	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	General L-amino acid ABC transporter permease protein.	0.987
aapJ	aapP	AWOD_I_1626	AWOD_I_1629	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	General L-amino acid transport ATP-binding subunit.	0.980
aapJ	aapQ	AWOD_I_1626	AWOD_I_1627	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	General L-amino acid ABC transporter permease protein.	0.986
aapJ	tusE	AWOD_I_1626	AWOD_I_1590	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Sulfurtransferase; Part of a sulfur-relay system.	0.400
aapJ	yccA	AWOD_I_1626	AWOD_I_1630	General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Inner membrane protein; Belongs to the BI1 family.	0.506
aapM	CED57056.1	AWOD_I_1628	AWOD_II_0411	General L-amino acid ABC transporter permease protein.	Amino acid ABC transporter, inner membrane component.	0.651
aapM	CED57059.1	AWOD_I_1628	AWOD_II_0414	General L-amino acid ABC transporter permease protein.	Amino acid ABC transporter, ATP-binding protein.	0.945

page 1 of 3

Server load: medium (58%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About