STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccAInner membrane protein; Belongs to the BI1 family. (220 aa)    
Predicted Functional Partners:
htpX
Probable protease HtpX homolog; Belongs to the peptidase M48B family.
  
  
 0.684
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.661
msrB-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
   0.596
aapQ
General L-amino acid ABC transporter permease protein.
       0.571
aapM
General L-amino acid ABC transporter permease protein.
       0.571
aapP
General L-amino acid transport ATP-binding subunit.
       0.516
aapJ
General L-amino acid-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.
       0.506
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.477
CED57256.1
UPF0502 protein; Belongs to the UPF0502 family.
   
    0.449
CED72365.1
Putative exported protein.
  
     0.435
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (20%) [HD]