Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nrfDCytochrome c-type biogenesis protein NrfD. (318 aa)    
Predicted Functional Partners:
nrfC
Cytochrome c-type biogenesis protein NrfC.
 
  
 0.957
nrfA
Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.951
nrfB
Cytochrome c-type protein NrfB precursor.
  
  
 0.913
nrfF
Cytochrome c biogenesis protein; Possible subunit of a heme lyase.
 
  
 0.797
ccmF
Cytochrome c-type biogenesis protein CcmF.
 
    0.781
nrfG
Putative formate-dependent nitrite reductase complex NrfG subunit.
 
  
 0.750
CED72591.1
Putative uncharacterized protein.
  
     0.648
CED57739.1
Polysulphide reductase, NrfD.
 
   
 0.640
CED71165.1
Putative exported heme-binding protein; No significant database matches.
  
  
 0.635
CED57738.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.627
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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