STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfBCytochrome c-type protein NrfB precursor. (197 aa)    
Predicted Functional Partners:
nrfD
Cytochrome c-type biogenesis protein NrfD.
  
  
 0.885
nrfC
Cytochrome c-type biogenesis protein NrfC.
  
  
 0.818
CED56961.1
Cytochrome c-type protein; Belongs to the TorC/TorY family.
  
 
 0.661
napC
Periplasmic nitrate reductase NapC.
  
 
 0.661
nrfA
Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
  
 0.658
ccmF
Cytochrome c-type biogenesis protein CcmF.
  
  
 0.596
nrfF
Cytochrome c biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.595
CED71710.1
Thiol/disulfide interchange protein.
       0.559
hmp
Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
     
 0.408
nirD
Nitrite reductase (NAD(P)H) small subunit.
   
  
 0.405
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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