STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nrfBCytochrome c-type protein NrfB precursor. (197 aa)    
Predicted Functional Partners:
nrfD
Cytochrome c-type biogenesis protein NrfD.
  
  
 0.913
nrfC
Cytochrome c-type biogenesis protein NrfC.
  
  
 0.871
nrfA
Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
  
 0.775
CED56961.1
Cytochrome c-type protein; Belongs to the TorC/TorY family.
  
 
 0.636
napC
Periplasmic nitrate reductase NapC.
  
 
 0.636
nrfF
Cytochrome c biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.635
ccmF
Cytochrome c-type biogenesis protein CcmF.
  
  
 0.635
CED71710.1
Thiol/disulfide interchange protein.
     
 0.569
nirD
Nitrite reductase (NAD(P)H) small subunit.
   
  
 0.463
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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