STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71720.1Membrane protein. (110 aa)    
Predicted Functional Partners:
sanA
Vancomycin resistance protein SanA.
       0.775
CED71405.1
Membrane protein.
  
     0.660
sfcA
NAD-dependent malic enzyme.
       0.649
CED71718.1
Putative ATP-dependent helicase.
 
     0.609
CED70939.1
Putative uncharacterized protein.
  
     0.446
CED71694.1
Putative uncharacterized protein.
  
    0.436
CED57831.1
Putative uncharacterized protein.
  
     0.423
CED57213.1
Putative uncharacterized protein.
 
     0.420
CED71682.1
Putative uncharacterized protein.
  
     0.420
kpsM
Capsular polysaccharide ABC transporter, membrane protein KpsM.
  
     0.403
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.