STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71728.1ABC-type cobalt transport system, ATP-binding protein. (570 aa)    
Predicted Functional Partners:
CED71727.1
ABC-type cobalt transport system, permease component.
 
 0.996
CED71729.1
Membrane protein.
 
  
 0.965
oppA
Oligopeptide ABC transporter, permease protein A.
  
 0.778
CED70549.1
(GlcNAc)2 ABC transporter, permease.
  
 
 0.746
oppB
Oligopeptide ABC transporter, permease protein B.
  
 
 0.746
CED72637.1
Peptide ABC transporter, permease protein.
  
 
 0.746
CED70548.1
(GlcNAc)2 ABC transporter, permease.
  
 
 0.736
oppC
Oligopeptide transport system permease protein C.
  
 
 0.736
CED72636.1
Peptide ABC transporter, permease protein.
  
 
 0.736
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.660
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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