STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshQ-2MSHA biogenesis protein MshQ. (2658 aa)    
Predicted Functional Partners:
CED56818.1
Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family.
  
 
 0.887
mshD-2
MSHA pilin protein MshD.
 
     0.882
mshP-2
MSHA biogenesis protein MshP.
 
     0.860
mshO-2
MSHA biogenesis protein MshO.
 
     0.854
mshC-2
MSHA pilin protein MshC.
       0.772
ftsK
DNA translocase FtsK.
    
 
 0.657
CED72570.1
Putative outer membrane associated TonB dependent receptor.
    
 
 0.614
CED70309.1
Putative glycosyl transferase, family 2.
   
 
 0.613
CED56812.1
TonB-dependent outer membrane receptor.
    
 
 0.580
CED57226.1
TonB-dependent receptor.
    
 
 0.580
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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